Publications

Ameline, C., Bourgeois, Y., Vögtli, F., Savola, E., Andras, J., Engelstädter, J. and Ebert, D. (2020) “A two-locus system with strong epistasis underlies rapid parasite-mediated evolution of host resistance”, Molecular Biology and Evolution . Oxford University Press, p. 1. doi: 10.1093/molbev/msaa311.   
Andras, J. P., Fields, P. D., Du Pasquier, L., Fredericksen, M. and Ebert, D. (2020) “Genome-Wide Association Analysis Identifies a Genetic Basis of Infectivity in a Model Bacterial Pathogen”, Molecular Biology and Evolution . Oxford University Press, 37(12), pp. 3439–3452. doi: 10.1093/molbev/msaa173.   edoc
Ebert, D. and Fields, P. D. (2020) “Host-parasite co-evolution and its genomic signature”, Nature reviews. Genetics, 21(12), pp. 754–768. doi: 10.1038/s41576-020-0269-1.   edoc
Bento, G., Fields, P. D., Duneau, D. and Ebert, D. (2020) “An alternative route of bacterial infection associated with a novel resistance locus in the Daphnia-Pasteuria host-parasite system”, Heredity, 125(4), pp. 173–183. doi: 10.1038/s41437-020-0332-x.   edoc
de Albuquerque, N. R. M., Ebert, D. and Haag, K. L. (2020) “Transposable element abundance correlates with mode of transmission in microsporidian parasites”, Mobile DNA, 11, p. 19. doi: 10.1186/s13100-020-00218-8.   edoc
Ho, E. K. H., Macrae, F., Latta, L. C., McIlroy, P., Ebert, D., Fields, P. D., Benner, M. J. and Schaack, S. (2020) “High and Highly Variable Spontaneous Mutation Rates in Daphnia”, Molecular Biology and Evolution . Oxford University Press, 37(11), pp. 3258–3266. doi: 10.1093/molbev/msaa142.   edoc | Open Access
Haag, K. L., Pombert, J.-F., Sun, Y., de Albuquerque, N. R. M., Batliner, B., Fields, P., Lopes, T. F. and Ebert, D. (2020) “Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes”, Genome Biology and Evolution. Oxford University Press, 12(1), pp. 3599–3614. doi: 10.1093/gbe/evz270.   edoc
Narr, C. F., Ebert, D., Bastille-Rousseau, G. and Frost, P. C. (2019) “Nutrient availability affects the prevalence of a microsporidian parasite”, JOURNAL OF ANIMAL ECOLOGY. WILEY, 88(4), pp. 579–590. doi: 10.1111/1365-2656.12945.   edoc
Ho, E. K. H., Macrae, F., Latta, L. C., Benner, M. J., Sun, C., Ebert, D. and Schaack, S. (2019) “Intraspecific Variation in Microsatellite Mutation Profiles in Daphnia magna”, MOLECULAR BIOLOGY AND EVOLUTION. OXFORD UNIV PRESS, 36(9), pp. 1942–1954. doi: 10.1093/molbev/msz118.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) “Data from: How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna ”. Dryad . doi: 10.5061/Dryad.C9q4gt6.   edoc
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) “Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota ”. Dryad . doi: 10.5061/Dryad.G75r459.   edoc
Czypionka, T., Fields, P. D., Routtu, J., van den Berg, E., Ebert, D. and De Meester, L. (2019) “The genetic architecture underlying diapause termination in a planktonic crustacean”, Molecular Ecology. Wiley, 28(5), pp. 998–1008. doi: 10.1111/mec.15001.   edoc
Brun, N. R., Fields, P. D., Horsfield, S., Mirbahai, L., Ebert, D., Colbourne, J. K. and Fent, K. (2019) “Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna”, Environmental Science and Technology. American Chemical Society, 53(3), pp. 1639–1649. doi: 10.1021/acs.est.8b05457.   edoc
Cornetti, L., Fields, P. D., Van Damme, K. and Ebert, D. (2019) “A fossil-calibrated phylogenomic analysis of Daphnia and the Daphniidae ”, Molecular Phylogenetics and Evolution. Elsevier, 137, pp. 250–262. doi: 10.1016/j.ympev.2019.05.018.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) “How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna ”, Journal of Evolutionary Biology. Wiley, 32(6), pp. 619–628. doi: 10.1111/jeb.13443.   edoc
Hall, M. D., Routtu, J. and Ebert, D. (2019) “Dissecting the genetic architecture of a stepwise infection process”, Molecular Ecology. Wiley, 28(17), pp. 3942–3957. doi: 10.1111/mec.15166.   edoc
Martin-Creuzburg, D., Coggins, B. L., Ebert, D. and Yampolsky, L. Y. (2019) “Rearing Temperature and Fatty Acid Supplementation Jointly Affect Lipid Fluorescence Polarization and Heat Tolerance in Daphnia ”, Physiological and Biochemical Zoology. The University of Chicago Press, 92(4), pp. 408–418. doi: 10.1086/704365.   edoc
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) “Environmental Sources of Bacteria and Genetic Variation in Behavior Influence Host-Associated Microbiota ”, Applied and Environmental Microbiology. Edited by A. J. M. Stams. American Society for Microbiology, 85(8), pp. e01547–18. doi: 10.1128/AEM.01547-18.   edoc
Savola, E. and Ebert, D. (2019) “Assessment of parasite virulence in a natural population of a planktonic crustacean ”, BMC ecology. BioMed Central, 19, p. 14. doi: 10.1186/s12898-019-0230-3.   edoc
Seefeldt, L. and Ebert, D. (2019) “Temperature - versus precipitation-limitation shape local temperature tolerance in a Holarctic freshwater crustacean”, Proceedings of the Royal Society. Series B, Biological Sciences. The Royal Society, 286(1907), p. 20190929. doi: 10.1098/rspb.2019.0929.   edoc
Dukic, M., Berner, D., Haag, C. R. and Ebert, D. (2019) “Data from: How clonal are clones? A quest for loss of heterozygosity during asexual reproduction in Daphnia magna”, Dryad, p. 1. doi: 10.5061/Dryad.C9q4gt6.   
Mushegian, A. A., Arbore, R., Walser, J.-C. and Ebert, D. (2019) “Data from: Environmental sources of bacteria and genetic variation in behavior influence host-associated microbiota”, Dryad, p. 1. doi: 10.5061/Dryad.G75r459.   
Mushegian, A., Walser, J.-C., Sullam, K. E. and Ebert, D. (2018) “The microbiota of diapause: how host-microbe associations are formed after dormancy in an aquatic crustacean”, Journal of Animal Ecology, 87(2), pp. 400–413. doi: 10.1111/1365-2656.12709.   edoc
Toenshoff, E. R., Fields, P. D., Bourgeois, Y. X. and Ebert, D. (2018) “The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton”, G3-Genes Genomes Genetics. Genetics Society of America, 8(4), pp. 1259–1272. doi: 10.1534/g3.117.300429.   edoc | Open Access
Sullam, K. E., Pichon, S., Schaer, T. M. M. and Ebert, D. (2018) “The Combined Effect of Temperature and Host Clonal Line on the Microbiota of a Planktonic Crustacean”, Microbial Ecology. Springer, 76(2), pp. 506–517. doi: 10.1007/s00248-017-1126-4.   edoc
Sison-Mangus, M. P., Metzger, C. M. J. A. and Ebert, D. (2018) “Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen”, Scientific Reports. Nature Research, 8(9407), pp. 1–10. doi: 10.1038/s41598-018-27681-x.   edoc | Open Access
Preiswerk, D., Walser, J.-C. and Ebert, D. (2018) “Temporal dynamics of microbiota before and after host death”, Isme Journal. Springer nature, 12(8), pp. 2076–2085. doi: 10.1038/s41396-018-0157-2.   edoc | Open Access
Gerber, N., Kokko, H., Ebert, D. and Booksmythe, I. (2018) “Daphnia invest in sexual reproduction when its relative costs are reduced”, Proceedings of the Royal Society B-Biological Sciences. The Royal Society, 285(1871), pp. 1–9. doi: 10.1098/rspb.2017.2176.   edoc
Fields, P. D., Obbard, D. J., McTaggart, S. J., Galimov, Y., Little, T. J. and Ebert, D. (2018) “Mitogenome phylogeographic analysis of a planktonic crustacean”, Molecular Phylogenetics and Evolution. Elsevier, 129, pp. 138–148. doi: 10.1016/j.ympev.2018.06.028.   edoc
Ebert, D. (2018) “Open questions: what are the genes underlying antagonistic coevolution?”, BMC Biology. BMC, 16(114), p. 1. doi: 10.1186/s12915-018-0583-7.   edoc | Open Access
Ebert, B., Ebert, D., Koebsch, K., Maser, E. and Kisiela, M. (2018) “Carbonyl reductases from Daphnia are regulated by redox cycling compounds”, Febs Journal. Wiley, 285(15), pp. 2869–2887. doi: 10.1111/febs.14578.   edoc
Booksmythe, I., Gerber, N., Ebert, D. and Kokko, H. (2018) “Daphnia females adjust sex allocation in response to current sex ratio and density”, Ecology Letters. Wiley, 21(5), pp. 629–637. doi: 10.1111/ele.12929.   edoc
Andras, J. P., Fields, P. D. and Ebert, D. (2018) “Spatial population genetic structure of a bacterial parasite in close coevolution with its host”, Molecular Ecology. Wiley, 27(6), pp. 1371–1384. doi: 10.1111/mec.14545.   edoc
Mushegian, A. A. and Ebert, D. (2017) “Presence of microbiota reverses the relative performance of Daphnia on two experimental diet”, Zoology. Elsevier GmbH, 125, pp. 29–31. doi: 10.1016/j.zool.2017.07.007.   edoc
Hall, M. D., Bento, G. and Ebert, D. (2017) “The Evolutionary Consequences of Stepwise Infection Processes”, Trends in Ecology & Evolution. Elsevier, 32(8), pp. 612–623. doi: 10.1016/j.tree.2017.05.009.   edoc
Brun, N. R., Beenakker, M. M. T., Hunting, E. R., Ebert, D. and Vijver, M. G. (2017) “Brood pouch-mediated polystyrene nanoparticle uptake during Daphnia magna embryogenesis”, Nanotoxicology. Taylor & Francis, 11(8), pp. 1059–1069. doi: 10.1080/17435390.2017.1391344.   edoc
Bourgeois, Y. X., Roulin, A. C., Muller, K. and Ebert, D. (2017) “Parasitism drives host genome evolution: Insights from the Pasteuria ramosa-Daphnia magna system ”, Evolution. Blackwell, 71(4), pp. 1106–1113. doi: 10.1111/evo.13209.   edoc
Bento, G., Routtu, J., Fields, P. D., Bourgeois, Y. X., Du Pasquier, L. and Ebert, D. (2017) “The genetic basis of resistance and matching-allele interactions of a host-parasite system: The Daphnia magna-Pasteuria ramosa model”, PLoS Genetics. Public Library of Science, 13(2), p. e1006596. doi: 10.1371/journal.pgen.1006596.   edoc
Krebs, M., Routtu, J. and Ebert, D. (2017) “QTL mapping of a natural genetic polymorphism for long-term parasite persistence in Daphnia populations”, Parasitology. Cambridge University Press, 144(13), pp. 1686–1694. doi: 10.1017/s0031182017001032.   edoc
Orsini, L., Gilbert, D., Podicheti, R., Jansen, M., Brown, J. B., Solari, O. S., Spanier, K. I., Colbourne, J. K., Rusch, D. B., Decaestecker, E., Asselman, J., De Schamphelaere, K. A. C., Ebert, D., Haag, C. R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A. P., Little, T. J., Chaturvedi, A., Pfrender, M. E., De Meester, L. and Frilander, M. J. (2017) “Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors (vol 3, 160030, 2016)”, Scientific Data, 4, p. 170006. doi: 10.1038/sdata.2016.30.   
Duneau, D., Ebert, D. and Du Pasquier, L. (2016) “Infections by Pasteuria do not protect its natural host Daphnia magna from subsequent infections”, Developmental and comparative immunology. Elsevier, 57, pp. 120–125. doi: 10.1016/j.dci.2015.12.004.   edoc
Roulin, A. C., Bourgeois, Y., Stiefel, U., Walser, J.-C. and Ebert, D. (2016) “A Photoreceptor Contributes to the Natural Variation of Diapause Induction in Daphnia magna”, Molecular Biology and Evolution . Oxford University Press, 33(12), pp. 3194–3204. doi: 10.1093/molbev/msw200.   edoc | Open Access
Michel, J., Ebert, D. and Hall, M. D. (2016) “The trans-generational impact of population density signals on host-parasite interactions”, BMC Evolutionary Biology. BioMed Central, 16(1), p. 254. doi: 10.1186/s12862-016-0828-4.   edoc
Retnaningdyah, C. and Ebert, D. (2016) “Bleach Solution Requirement for Hatching of Daphnia magna Resting Eggs”, Journal of Tropical Life Science. University of Brawijaya, 6, pp. 136–141. doi: 10.11594/jtls.06.03.0.   edoc | Open Access
Arbore, R., Andras, J. P., Routtu, J. and Ebert, D. (2016) “Ecological genetics of sediment browsing behaviour in a planktonic crustacean”, Journal of Evolutionary Biology. Wiley, 29(10), pp. 1999–2009. doi: 10.1111/jeb.12923.   edoc
Altermatt, F. and Ebert, D. (2016) “Reduced flight-to-light behaviour of moth populations exposed to long-term urban light pollution”, Biology Letters. The Royal Society, 12(4), p. 20160111. doi: 10.1098/rsbl.2016.0111.   edoc
Metzger, C. M. J. A., Luijckx, P., Bento, G., Mariadassou, M. and Ebert, D. (2016) “The Red Queen lives: Epistasis between linked resistance loci”, Evolution. Blackwell, 70(2), pp. 480–487. doi: 10.1111/evo.12854.   edoc
Mushegian, A. A., Burcklen, E., Schär, T. M. M. and Ebert, D. (2016) “Temperature-dependent benefits of bacterial exposure in embryonic development of Daphnia magna resting eggs”, Journal of Experimental Biology . Company of Biologists, 219(6), pp. 897–904. doi: 10.1242/jeb.134759.   edoc | Open Access
Rabajante, J. F., Tubay, J. M., Ito, H., Uehara, T., Kakishima, S., Morita, S., Yoshimura, J. and Ebert, D. (2016) “Host-parasite Red Queen dynamics with phase-locked rare genotypes”, Science Advances. American Association for the Advancement of Science, 2(3), p. e1501548. doi: 10.1126/sciadv.1501548.   edoc | Open Access
Ebert, D., Duneau, D., Hall, M. D., Luijckx, P., Andras, J. P., Du Pasquier, L. and Ben-Ami, F. (2016) “A Population Biology Perspective on the Stepwise Infection Process of the Bacterial Pathogen Pasteuria ramosa in Daphnia”, Advances in Parasitology . Elsevier, 91, pp. 265–310. doi: 10.1016/bs.apar.2015.10.001.   edoc
Orsini, L., Gilbert, D., Podicheti, R., Jansen, M., Brown, J. B., Solari, O. S., Spanier, K. I., Colbourne, J. K., Rush, D., Decaestecker, E., Asselman, J., De Schamphelaere, K. A. C., Ebert, D., Haag, C. R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A. P., Little, T. J., Chaturvedi, A., Pfrender, M. E., De Meester, L. and Frilander, M. J. (2016) “Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors”, Scientific Data. Springer Nature, 3, p. 160030. doi: 10.1038/sdata.2016.30.   edoc | Open Access
Schlotz, N., Roulin, A., Ebert, D. and Martin-Creuzburg, D. (2016) “Combined effects of dietary polyunsaturated fatty acids and parasite exposure on eicosanoid-related gene expression in an invertebrate model”, Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology. Elsevier, 201, pp. 115–123. doi: 10.1016/j.cbpa.2016.07.008.   edoc
Dukić, M., Berner, D., Roesti, M., Haag, C. R. and Ebert, D. (2016) “A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna”, BMC genetics, 17(1), p. 137. doi: 10.1186/s12863-016-0445-7.   edoc | Open Access
Mushegian, A. A. and Ebert, D. (2016) “Rethinking ‘mutualism’ in diverse host-symbiont communities”, Bioessays. The Company of Biologists, 38(1), pp. 100–108. doi: 10.1002/bies.201500074.   edoc
Lange, B., Kaufmann, A. P. and Ebert, D. (2015) “Genetic, ecological and geographic covariables explaining host range and specificity of a microsporidian parasite”, The journal of animal ecology. Blackwell Science, 84(6), pp. 1711–1719. doi: 10.1111/1365-2656.12421.   edoc
Roulin, A. C., Mariadassou, M., Hall, M. D., Walser, J.-C., Haag, C. and Ebert, D. (2015) “High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation?”, Evolution. Blackwell, 69(10), pp. 2747–2756. doi: 10.1111/evo.12770.   edoc
Fields, P. D., Reisser, C., Dukić, M., Haag, C. R. and Ebert, D. (2015) “Genes mirror geography in Daphnia magna”, Molecular ecology. Blackwell, 24(17), pp. 4521–4536. doi: 10.1111/mec.13324.   edoc
Mariadassou, M., Pichon, S. and Ebert, D. (2015) “Microbial ecosystems are dominated by specialist taxa”, Ecology letters. Blackwell, pp. 974–982. doi: 10.1111/ele.12478.   edoc
Rabajante, J. F., Tubay, J. M., Uehara, T., Morita, S., Ebert, D. and Yoshimura, J. (2015) “Red Queen dynamics in multi-host and multi-parasite interaction system”, Scientific Reports. Nature Publishing Group, 5, p. 10004. doi: 10.1038/srep10004.   edoc
Clerc, M., Ebert, D. and Hall, M. D. (2015) “Expression of parasite genetic variation changes over the course of infection: implications of within-host dynamics for the evolution of virulence”, Proceedings of the Royal Society. Series B, Biological sciences. The Royal Society, 282(1804), p. 20142820. doi: 10.1098/rspb.2014.2820.   edoc
Pombert, J.-F., Haag, K. L., Beidas, S., Ebert, D. and Keeling, P. J. (2015) “The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer”, mBio. American Society for Microbiology, 6(1), pp. e02400–14. doi: 10.1128/mBio.02400-14.   edoc
Sison-Mangus, M. P., Mushegian, A. A. and Ebert, D. (2015) “Water fleas require microbiota for survival, growth and reproduction”, ISME Journal. Nature Publishing Group, 9(1), pp. 59–67. doi: 10.1038/ismej.2014.116.   edoc
Routtu, J. and Ebert, D. (2015) “Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites”, Heredity. Nature Publishing Group, 114(2), pp. 241–248. doi: 10.1038/hdy.2014.97.   edoc
Sheikh-Jabbari, E., Hall, M. D., Ben-Ami, F. and Ebert, D. (2014) “The expression of virulence for a mixed-mode transmitted parasite in a diapausing host”, Parasitology. Cambridge University Press, 141(8), pp. 1097–1107. doi: 10.1017/S0031182014000456.   edoc | Open Access
Routtu, J., Hall, M. D., Albere, B., Beisel, C., Bergeron, R. D., Chaturvedi, A., Choi, J. H., Colbourne, J., De Meester, L., Stephens, M. T., Stelzer, C. P., Solorzano, E., Thomas, W. K., Pfrender, M. E. and Ebert, D. (2014) “An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits”, BMC genomics. BioMed Central, Vol. 15 , 1033. doi: 10.1186/1471-2164-15-1033.   edoc | Open Access
Haag, K. L., James, T. Y., Pombert, J. F., Larsson, R., Schaer, T. M. M., Refardt, D. and Ebert, D. (2014) “Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites”, Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, no. 43, pp. 15480–15485. doi: 10.1073/Pnas.1410442111.   edoc
Lange, B., Reuter, M., Ebert, D., Muylaert, K. and Decaestecker, E. (2014) “Diet quality determines interspecific parasite interactions in host populations”, Ecology and evolution. John Wiley & Sons, Vol. 4, H. 15, pp. 3093–3102. doi: 10.1002/Ece3.1167.   edoc | Open Access
Chipman, A. D., Ferrier, D. E. K., Brena, C., Qu, J., Hughes, D. S. T., Schröder, R., Torres-Oliva, M., Znassi, N., Jiang, H., Almeida, F. C., Alonso, C. R., Apostolou, Z., Aqrawi, P., Arthur, W., Barna, J. C. J., Blankenburg, K. P., Brites, D., Capella-Gutiérrez, S., Coyle, M., Dearden, P. K., Du Pasquier, L., Duncan, E. J., Ebert, D., Eibner, C., Erikson, G., Evans, P. D., Extavour, C. G., Francisco, L., Gabaldón, T., Gillis, W. J., Goodwin-Horn, E. A., Green, J. E., Griffiths-Jones, S., Grimmelikhuijzen, C. J. P., Gubbala, S., Guigó, R., Han, Y., Hauser, F., Havlak, P., Hayden, L., Helbing, S., Holder, M., Hui, J. H. L., Hunn, J. P., Hunnekuhl, V. S., Jackson, L., Javaid, M., Jhangiani, S. N., Jiggins, F. M., Jones, T. E., Kaiser, T. S., Kalra, D., Kenny, N. J., Korchina, V., Kovar, C. L., Kraus, F. B., Lapraz, F., Lee, S. L., Lv, J., Mandapat, C., Manning, G., Mariotti, M., Mata, R., Mathew, T., Neumann, T., Newsham, I., Ngo, D. N., Ninova, M., Okwuonu, G., Ongeri, F., Palmer, W. J., Patil, S., Patraquim, P., Pham, C., Pu, L.-L., Putman, N. H., Rabouille, C., Ramos, O. M., Rhodes, A. C., Robertson, H. E., Robertson, H. M., Ronshaugen, M., Rozas, J., Saada, N., Sánchez-Gracia, A., Scherer, S. E., Schurko, A. M., Siggens, K. W., Simmons, D., Stief, A., Stolle, E., Telford, M. J., Tessmar-Raible, K., Thornton, R., van der Zee, M., von Haeseler, A., Williams, J. M., Willis, J. H., Wu, Y., Zou, X., Lawson, D., Muzny, D. M., Worley, K. C., Gibbs, R. A., Akam, M. and Richards, S. (2014) “The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede strigamia maritima”, PLoS biology. Public Library of Science, 12(11), p. e1002005. doi: 10.1371/journal.pbio.1002005.   edoc | Open Access
Yampolsky, L. Y., Schaer, T. M. M. and Ebert, D. (2014) “Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton”, Proceedings of the Royal Society. Series B, Biological Sciences. The Royal Society, 281(1776), p. 20132744. doi: 10.1098/rspb.2013.2744.   edoc
Luijckx, P., Duneau, D., Andras, J. P. and Ebert, D. (2014) “Cross-species infection trials reveal cryptic parasite varieties and a putative polymorphism shared among host species”, Evolution. Blackwell, 68(2), pp. 577–586. doi: 10.1111/evo.12289.   edoc
Ebert, D., Hottinger, J. W. and Pajunen, V. I. (2013) “Unsuitable habitat patches lead to severe underestimation of dynamics and gene flow in a zooplankton metapopulation”, The Journal of Animal Ecology. Blackwell Science, 82(4), pp. 759–769. doi: 10.1111/1365-2656.12044.   edoc
Andras, J. P. and Ebert, D. (2013) “A novel approach to parasite population genetics: experimental infection reveals geographic differentiation, recombination and host-mediated population structure in Pasteuria ramosa, a bacterial parasite of Daphnia”, Molecular Ecology. Blackwell, 22(4), pp. 972–986. doi: 10.1111/mec.12159.   edoc
Ebert, D. (2013) “The epidemiology and evolution of symbionts with mixed-mode Transmission”, Annual Review of Ecology, Evolution, and Systematics. Annual Reviews, 44, pp. 623–643. doi: 10.1146/annurev-ecolsys-032513-100555.   edoc
Luijckx, P., Fienberg, H., Duneau, D. and Ebert, D. (2013) “A matching-allele model explains host resistance to parasites”, Current Biology. Cell Press, 23(12), pp. 1085–1088. doi: 10.1016/j.cub.2013.04.064.   edoc
Hall, M. D. and Ebert, D. (2013) “The genetics of infectious disease susceptibility: has the evidence for epistasis been overestimated?”, BMC biology. BioMed Central, Vol. 11 , Art. 79. doi: 10.1186/1741-7007-11-79.   edoc | Open Access
Haag, K. L., Sheikh-Jabbari, E., Ben-Ami, F. and Ebert, D. (2013) “Microsatellite and single-nucleotide polymorphisms indicate recurrent transitions to asexuality in a microsporidian parasite”, Journal of Evolutionary Biology. Wiley, 26(5), pp. 1117–1128. doi: 10.1111/jeb.12125.   edoc
Brites, D., Brena, C., Ebert, D. and Du Pasquier, L. (2013) “More than one way to produce protein diversity: duplication and limited alternative splicing of an adhesion molecule gene in basal arthropods”, Evolution. Blackwell, 67(10), pp. 2999–3011. doi: 10.1111/evo.12179.   edoc
Schlotz, N., Ebert, D. and Martin-Creuzburg, D. (2013) “Dietary supply with polyunsaturated fatty acids and resulting maternal effects influence host -- parasite interactions”, BMC ecology. BioMed Central, Vol. 13 , 41. doi: 10.1186/1472-6785-13-41.   edoc | Open Access
Roulin, A. C., Routtu, J., Hall, M. D., Janicke, T., Colson, I., Haag, C. R. and Ebert, D. (2013) “Local adaptation of sex induction in a facultative sexual crustacean: insights from QTL mapping and natural populations of Daphnia magna”, Molecular Ecology. Blackwell, 22(13), pp. 3567–3579. doi: 10.1111/mec.12308.   edoc
Haag, K. L., Traunecker, E. and Ebert, D. (2013) “Single-nucleotide polymorphisms of two closely related microsporidian parasites suggest a clonal population expansion after the last glaciation”, Molecular Ecology. Blackwell, 22(2), pp. 314–326. doi: 10.1111/mec.12126.   edoc
Hall, M. D., Vettiger, A. and Ebert, D. (2013) “Interactions between environmental stressors: the influence of salinity on host-parasite interactions between Daphnia magna and Pasteuria ramosa”, Oecologia. Springer, 171(4), pp. 789–796. doi: 10.1007/s00442-012-2452-3.   edoc
Antonovics, J., Boots, M., Ebert, D., Koskella, B., Poss, M. and Sadd, B. M. (2013) “The origin of specificity by means of natural selection: evolved and nonhost resistance in host-pathogen interactions”, Evolution. Blackwell, 67(1), pp. 1–9. doi: 10.1111/j.1558-5646.2012.01793.x.   edoc
Le Codiac, M., Simon, M., Marchetti, A., Ebert, D. and Cosson, P. (2012) “Daphnia magna, a host to evaluate bacterial virulence”, Applied and Environmental Microbiology. American Society for Microbiology, 78, pp. 593–595. doi: 10.1128/AEM.06278-11.   edoc | Open Access
Kawecki, T. J., Lenski, R. E., Ebert, D., Hollis, B., Olivieri, I. and Whitlock, M. C. (2012) “The value of complementary approaches in evolutionary research: reply to Magalhães and Matos”, Trends in Ecology & Evolution. Elsevier, 27(12), pp. 650–651. doi: 10.1016/j.tree.2012.09.007.   edoc
Duneau, D. and Ebert, D. (2012) “The role of moulting in parasite defense”, Proceedings of the Royal Society. Series B, Biological Sciences. The Royal Society, 279(1740), pp. 3049–3054. doi: 10.1098/rspb.2012.0407.   edoc
Mennerat, A., Hamre, L., Ebert, D., Nilsen, F., Da Vidova, M. and Skorping, A. (2012) “Life history and virulence are linked in the ectoparasitic salmon louse Lepeophtheirus salmonis”, Journal of Evolutionary Biology. Blackwell, 25(5), pp. 856–861. doi: 10.1111/j.1420-9101.2012.02474.x.   edoc
Hall, M. D. and Ebert, D. (2012) “Disentangling the influence of parasite genotype, host genotype and maternal environment on different stages of bacterial infection in Daphnia magna”, Proceedings of the Royal Society. Series B, Biological sciences. The Royal Society, 279(1741), pp. 3176–3183. doi: 10.1098/rspb.2012.0509.   edoc
Duneau, D. and Ebert, D. (2012) “Host sexual dimorphism and parasite adaptation”, PLoS biology. Public Library of Science, Vol. 10, H. 2 , e1001271. doi: 10.1371/journal.pbio.1001271.   edoc | Open Access
Refardt, D. and Ebert, D. (2012) “The impact of infection on host competition and its relationship to parasite persistence in a Daphnia-microparasite system”, Evolutionary Ecology. Springer, 26(1), pp. 95–107. doi: 10.1007/s10682-011-9487-5.   edoc | Open Access
Luijckx P., F. H. and Duneau D., E. D. (2012) “Resistance to a bacterial parasite in the crustacean Daphnia magna shows Mendelian segregation with dominance”, Heredity. Nature Publishing Group, 108(5), pp. 547–551. doi: 10.1038/hdy.2011.122.   edoc
Kawecki, T. J., Lenski, R. E., Ebert, D., Hollis, B., Olivieri, I. and Whitlock, M. C. (2012) “Experimental evolution”, Trends in Ecology & Evolution. Elsevier Science Publishing, 27(10), pp. 547–560. doi: 10.1016/j.tree.2012.06.001.   edoc
Ben-Ami, F., Rigaud, T. and Ebert, D. (2011) “The expression of virulence during double infections by different parasites with conflicting host exploitation and transmission strategies”, Journal of Evolutionary Biology. Wiley, 24(6), pp. 1307–1316. doi: 10.1111/j.1420-9101.2011.02264.x.   edoc
McElroy, K., Mouton, L., Du Pasquier, L., Qi, W. and Ebert, D. . (2011) “Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa”, Research in Microbiology. Elsevier, 162(7), pp. 701–714. doi: 10.1016/j.resmic.2011.06.009.   edoc
Ebert, D. (2011) “A genome for the environment”, Science. American Association for the Advancement of Science, 331(6017), pp. 539–540. doi: 10.1126/science.1202092.   edoc
Duneau, D., Luijckx, P., Ben-Ami, F., Laforsch, C. and Ebert, D. (2011) “Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions”, BMC biology. BioMed Central, Vol. 9 , Art. 11. doi: 10.1186/1741-7007-9-11.   edoc | Open Access
Brites, D., Encinas-Viso, F., Ebert, D., Du Pasquier, L. and Haag, C. R. (2011) “Population genetics of duplicated alternatively spliced exons of the dscam gene in Daphnia and Drosophila”, PLoS ONE. Public Library of Science, Vol. 6, H. 12 , e27947. doi: 10.1371/journal.pone.0027947.   edoc | Open Access
Lass, S., Hottinger, J. W., Fabbro, T. and Ebert, D. (2011) “Converging seasonal prevalence dynamics in experimental epidemics”, BMC ecology. BioMed Central, Vol. 11 , 14.   edoc | Open Access
Luickx, P., Ben-Ami, F., Mouton, L., Du Pasquier, L. and Ebert, D. (2011) “Cloning of the unculturable parasite Pasteuria ramosa and its Daphnia host reveals extreme genotype-genotype interactions”, Ecology letters. Blackwell, 14(2), pp. 125–131. doi: 10.1111/j.1461-0248.2010.01561.x.   edoc
Haag, K. L., Larsson, J. I. R., Refardt, D. and Ebert, D. (2011) “ nov”., Parasitology. Cambridge University Press, Vol. 138, H. 4, pp. 447–462. doi: 10.1017/S0031182010001393.   edoc | Open Access
Luijckx, P., Fienberg, H., Duneau, D. and Ebert, D. (2011) “Resistance to a bacterial parasite in the crustacean Daphnia magna shows Mendelian segregation with dominance”, Heredity, pp. 1–5. doi: 10.1038/hdy2011.122.   
Routtu, J., Jansen, B., Colson, I., De Meester, L. and Ebert, D. (2010) “The first-generation Daphnia magna linkage map”, BMC genomics. BioMed Central, Vol. 11 , 508. doi: 10.1186/1471-2164-11-508.   edoc | Open Access
Altermatt, F., Pajunen, V. I. and Ebert, D. (2010) “Populations in small, ephemeral habitat patches may drive dynamics in a Daphnia magna metapopulation”, Ecology. Ecological Society of America, Vol. 91, Nr. 10, pp. 2975–2982. doi: 10.1890/09-2016.1.   edoc | Open Access
Ganz, H. and Ebert, D. (2010) “Benefits of host genetic diversity for resistance to infection depend on parasite diversity”, Ecology. Ecological Society of America, Vol. 91, pp. 1263–1268.   edoc | Open Access
Pulkkinen, K., Suomalainen, L. .-R., Read, A. F., Ebert, D., Rintamäki, P. and Valtonen, E. T. (2010) “Intensive fish farming and the evolution of pathogen virulence : the case of columnaris disease in Finland”, Proceedings of the Royal Society. Series B, Biological sciences. The Royal Society, 2(1681), pp. 593–600. doi: 10.1098/rspb.2009.1659.   edoc
Keeling, P. J., Corradi, N., Morrison, H. G., Haag, K. L., Ebert, D., Weiss, L. M., Akiyoshi, D. E. and Tzipori, S. (2010) “The reduced genome of the parasitic Microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism”, Genome biology and evolution. Oxford University Press, Vol. 2, pp. 304–309. doi: 10.1093/gbe/evq022.   edoc | Open Access
Frost, P. C., Ebert, D., Larson, J. H., Marcus, M. A., Wagner, N. D. and Zalewski, A. (2010) “Transgenerational effects of poor elemental food quality on an aquatic invertebrate”, Oecologia. Springer, 162(4), pp. 865–872. doi: 10.1007/s00442-009-1517-4.   edoc
Mennerat, A., Nilsen, F., Ebert, D. and Skorping, A. (2010) “Intensive farming: bevolutionary implications for parasites and pathogens”, Evolutionary biology. Springer, Vol. 37, H. 2/3, pp. 59–67. doi: 10.1007/s11692-010-9089-0.   edoc
Ben-Ami, F., Ebert, D. and Regoes, R. (2010) “Pathogen dose infectivity curves as a method to analyze the distribution of host susceptibility : a quantitative assessment of maternal effects after food stress and pathogen exposure”, The American naturalist. University of Chicago Press, Vol. 175, pp. 106–115. doi: 10.1086/648672.   edoc | Open Access
Mouton, L., Traunecker, E., McElroy, K., Du Pasquier, L. and Ebert, D. (2009) “Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa”, Research in microbiology. Elsevier, Vol. 160, pp. 792–799.   edoc
Colson, I., Du Pasquier, L. and Ebert, D. (2009) “Intragenic tandem repeats in Daphnia magna: structure, function and distribution”, BMC Research Notes. BioMed Central, Vol. 2 , 206, 6 S. doi: 10.1186/1756-0500-2-206.   edoc | Open Access
Corradi, N., Haag, K. L., Pombert, J. F., Ebert, D. and Keeling, P. J. (2009) “Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions”, Genome biology. BioMed Central, Vol. 10, H. 10 , R106. doi: 10.1186/gb-2009-10-10-r106.   edoc | Open Access
Qi, W., Nong, G., Preston, J. F., Ben-Ami, F. and Ebert, D. (2009) “Comparative metagenomics of Daphnia symbionts”, BMC Genomics. BioMed Central, Vol. 10 , 172. doi: 10.1186/1471-2164-10-172.   edoc | Open Access
Altermatt, F., Baumeyer, A. and Ebert, D. (2009) “Experimental evidence for male biased flight-to-light behavior in two moth species”, Entomologia Experimentalis et Applicata. Blackwell Science, 130(3), pp. 259–265. doi: 10.1111/j.1570-7458.2008.00817.x.   edoc
Bieger, A. and Ebert, D. (2009) “Expression of parasite virulence at different host population densities under natural conditions”, Oecologia. Springer, Vol. 160, H. 2, pp. 247–255.   edoc
Altermatt, F., Pajunen, I. and Ebert, D. (2009) “Desiccation of rock pool habitats and its influence onpopulation persistence in a Daphnia metacommunity”, PLoS ONE. Public Library of Science, Vol. 4, H. 3 , e4703.   edoc | Open Access
Gaba, S. and Ebert, D. (2009) “Time-shift experiments as a tool to study antagonistic coevolution”, Trends in Ecology & Evolution. Elsevier Science Publishing, 24(4), pp. 226–232. doi: 10.1016/j.tree.2008.11.005.   edoc
Ebert, D. (2008) “Host-parasite coevolution : insights from the Daphnia-parasite model system”, Current Opinion in Microbiology. Elsevier, 11(3), pp. 290–301. doi: 10.1016/j.mib.2008.05.012.   edoc
Ben-Ami, F., Regoes, R. R. and Ebert, D. (2008) “A quantitative test of the relationship between parasite dose and infection probability across different host-parasite combinations”, Proceedings of the Royal Society. Series B, Biological Sciences. The Royal Society, 275(1636), pp. 853–859. doi: 10.1098/rspb.2007.1544.   edoc
Bull, J. J. and Ebert, D. (2008) “Invasion thresholds and the evolution of nonequilibrium virulence”, Evolutionary Applications. Wiley, 1(1), pp. 172–182. doi: 10.1111/j.1752-4571.2007.00003.x.   edoc | Open Access
Altermatt, F., Pajunen, V. I. and Ebert, D. (2008) “Climate change affects colonization dynamics in a metacommunity of three Daphnia species”, Global Change Biology. Blackwell Science, 14(6), pp. 1209–1220. doi: 10.1111/j.1365-2486.2008.01588.x.   edoc
Brites, D., McTaggart, S., Morris, K., Anderson, J., Thomas, K., Colson, I., Fabbro, T., Little, T. J., Ebert, D. and Du Pasquier, L. (2008) “The Dscam homologue of the crustacean Daphnia is diversified by alternative splicing like in insects”, Molecular biology and evolution. Oxford University Press, 25(7), pp. 1429–1439. doi: 10.1093/molbev/msn087.   edoc | Open Access
Frost, P. C., Ebert, D. and Smith, V. H. (2008) “Responses of a bacterial pathogen to phosphorus limitation of its aquatic invertebrate host”, Ecology. Ecological Society of America, 89, Nr. 2, pp. 313–318. Available at: http://www.jstor.org/stable/27651543.   edoc | Open Access
Frost, P. C., Ebert, D. and Smith, V. H. (2008) “Bacterial infection changes the elemental composition of Daphnia magna”, The journal of animal ecology. Blackwell Science, Vol. 77, H. 6, pp. 1265–1272.   edoc
Roth, O., Ebert, D., Vizoso, D. B., Bieger, A. and Lass, S. (2008) “Male-biased sex-ratio distortion caused by Octosporea bayeri, a vertically and horizontally-transmitted parasite of Daphnia magna”, International Journal for Parasitology. Elsevier, 38(8/9), pp. 969–979. doi: 10.1016/j.ijpara.2007.11.009.   edoc
Altermatt, F. and Ebert, D. (2008) “The influence of pool volume and summer desiccation on the production of the resting and dispersal stage in a Daphnia metapopulation”, Oecologia. Springer, 157(3), pp. 441–452. doi: 10.1007/s00442-008-1080-4.   edoc | Open Access
Altermatt, F. and Ebert, D. (2008) “Genetic diversity of Daphnia magna populations enhances resistance to parasites”, Ecology Letters. Blackwell, 11(9), pp. 918–928. doi: 10.1111/j.1461-0248.2008.01203.x.   edoc
Mouton, L. and Ebert, D. (2008) “Variable-number-of-tandem-repeats analysis of genetic diversity in Pasteuria ramosa”, Current Microbiology. Springer, Vol. 56, H. 5, pp. 447–452.   edoc
Zbinden, M., Haag, C. R. and Ebert, D. (2008) “Experimental evolution of field populations of Daphnia magna in response to parasite treatment”, Journal of Evolutionary Biology. Blackwell, 21(4), pp. 1068–1078. doi: 10.1111/j.1420-9101.2008.01541.x.   edoc
Rodrigues, J. L. M., Duffy, M. A., Tessier, A. J., Ebert, D., Mouton, L. and Schmidt, T. M. (2008) “Phylogenetic characterization and prevalence of Spirobacillus cienkowskii : a red-pigmented, spiral-shaped bacterial pathogen of the freshwater Cladoceran, Daphnia”, Applied and Environmental Microbiology. American Society for Microbiology, 74(5), pp. 1575–1582. doi: 10.1128/AEM.02438-07.   edoc | Open Access
Schmidt, L. M., Mouton, L., Nong, G., Ebert, D. and Preston, J. F. (2008) “Genetic and immunological comparison of the cladoceran parasite Pasteuria ramosa with the nematode parasite Pasteuria penetrans”, Applied and Environmental Microbiology. American Society for Microbiology, Vol. 74, H. 1, pp. 259–264.   edoc
Ben-Ami, F., Mouton, L. and Ebert, D. (2008) “The effects of multiple infections on the expression and evolution of virulence in a Daphnia-endoparasite system”, Evolution. Blackwell, 62(7), pp. 1700–1711. doi: 10.1111/j.1558-5646.2008.00391.x.   edoc
Ebert, D., Altermatt, F. and Lass, S. (2007) “A short term benefit for outcrossing in a Daphnia metapopulation in relation to parasitism”, Journal of the Royal Society Interface, 4(16), pp. 777–785.   
Altermatt, F. and Ebert, D. (2007) “The genotype specific competitive ability does not correlate with infection in natural Daphnia magna populations”, PLoS one, 2(12), p. e1280. doi: 10.1371/journal.pone.0001280.   
Altermatt, F., Hottinger, J. and Ebert, D. (2007) “Parasites promote host gene flow in a metapopulation”, Evolutionary Ecology, 21(4), pp. 561–575.   
Haag, C. R. and Ebert, D. (2007) “Genotypic selection in Daphnia populations consisting of inbred sibships”, Journal of evolutionary Biology, 20(3), pp. 881–891.   
Refardt, D. and Ebert, D. (2007) “Inference of parasite local adaptation using two different fitness components”, Journal of evolutionary Biology, 20, pp. 921–929.   
Decaestecker, E., Gaba, S., Raeymaekers, J. A. M., Stoks, R., Van Kerckhoven, L., Ebert, D. and De Meester, L. (2007) “Host-parasite ’Red Queen’ dynamics archived in pond sediment”, Nature, 450, pp. 870-U16.   
Mouton, L., Nong, G., Preston, J. F. and Ebert, D. (2007) “Variable-number tandem repeats as molecular markers for biotypes of Pasteuria ramosa in Daphnia spp”, Applied and Environmental Microbiology, 73(11), pp. 3715–3718.   
Ebert, D. (2005) Ecology, epidemiology, and evolution of parasitism in daphnia. Bethesda: National Library of Medicine. Available at: http://www.ncbi.nlm.nih.gov/books/NBK2036/, http://www.evolution.unibas.ch/ebert/publications/parasitismdaphnia/index.htm.   edoc | Open Access
Ebert, D., Haag, C., Kirkpatrick, M., Riek, M., Hottinger, J. W. and Pajunen, V. I. (2002) “A selective advantage to immigrant genes in a Daphnia metapopulation”, Science. American Association for the Advancement of Science, 295, pp. 485–488.   edoc
Ebert, D. and Yampolsky, L. Y. (1992) “Family planning in Daphnia: When is clutch size determined?”, Russian Journal of Aquatic Ecology, 1, pp. 143–147.   
Ebert, D. and Jacobs, J. (1991) “Differences in life history and aging in two clonal groups of Daphnia cucullata Sars (Crustacea: Cladocera)”, Hydrobiologia. Springer, Vol. 225, pp. 245–253.   edoc