Publications

Becskei, A. (2020) “Tuning up Transcription Factors for Therapy”, Molecules. MDPI, 25(8), p. 1902. doi: 10.3390/molecules25081902.   edoc
Wada, T., Wallerich, S. and Becskei, A. (2019) “Synthetic transcription factors switch from local to long-range control during cell differentiation”, ACS Synthetic Biology. American Chemical Society , 8(2), pp. 223–231. doi: 10.1021/acssynbio.8b00369.   edoc
Baudrimont, A., Jaquet, V., Wallerich, S., Voegeli, S. and Becskei, A. (2019) “Contribution of RNA Degradation to Intrinsic and Extrinsic Noise in Gene Expression”, Cell reports. Elsevier, 26(13), pp. 3752–3761.e5. doi: 10.1016/j.celrep.2019.03.001.   edoc | Open Access
Wada, T., Wallerich, S. and Becskei, A. (2018) “Stochastic Gene Choice during Cellular Differentiation”, Cell reports, 24(13), pp. 3503–3512. doi: 10.1016/j.celrep.2018.08.074.   edoc
Wada, T. and Becskei, A. (2017) “Impact of Methods on the Measurement of mRNA Turnover”, International Journal of Molecular Sciences. Molecular Diversity Preservation International, 18(12), p. 12. doi: 10.3390/ijms18122723.   edoc | Open Access
Jaquet, V., Hsu, C. and Becskei, A. (2017) “Measurement of bistability in a multidimensional parameter space”, Integrative Biology. Royal Society of Chemistry, 9(2), pp. 167–177. doi: 10.1039/c6ib00242k.   edoc | Open Access
Baudrimont, A., Voegeli, S., Viloria, E. C., Stritt, F., Lenon, M., Wada, T., Jaquet, V. and Becskei, A. (2017) “Multiplexed gene control reveals rapid mRNA turnover”, Science Advances. American Association for the Advancement of Science, 3(7), p. e1700006. doi: 10.1126/sciadv.1700006.   edoc | Open Access
Gencoglu, M., Schmidt, A. and Becskei, A. (2017) “Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry”, ACS Synthetic Biology. American Chemical Society , 6(7), pp. 1305–1314. doi: 10.1021/acssynbio.6b00282.   edoc | Open Access
Maleki, F. and Becskei, A. (2017) “An open-loop approach to calculate noise-induced transitions”, Journal of Theoretical Biology. Elsevier, pp. 1–13. doi: 10.1016/j.jtbi.2016.12.012.   edoc | Open Access
Hsu, C., Jaquet, V., Maleki, F. and Becskei, A. (2016) “Contribution of bistability and noise to cell fate transitions determined by feedback opening”, Journal of Molecular Biology. Elsevier, 428(20), pp. 4115–4128. doi: 10.1016/j.jmb.2016.07.024.   edoc | Open Access
Hsu, C., Jaquet, V., Gencoglu, M. and Becskei, A. (2016) “Protein Dimerization Generates Bistability in Positive Feedback Loops”, Cell Reports . Elsevier, 16(5), pp. 1204–1210. doi: 10.1016/j.celrep.2016.06.072.   edoc | Open Access
Májer, I., Hajihosseini, A. and Becskei, A. (2015) “Identification of optimal parameter combinations for the emergence of bistability”, Physical biology. Institute of Physics Publishing (IOP) , 12(6), p. 66011. doi: 10.1088/1478-3975/12/6/066011.   edoc | Open Access
Baudrimont, A. and Becskei, A. (2015) “Gene regulation: Expression feels two pulses”, Nature. Macmillan, pp. 46–47. doi: 10.1038/nature15634.   edoc
Bonde, M. M., Voegeli, S., Baudrimont, A., Séraphin, B. and Becskei, A. (2014) “Quantification of pre-mRNA escape rate and synergy in splicing”, Nucleic acids research. Oxford University Press, Vol. 42, H. 20, pp. 12847–12860. doi: 10.1093/nar/gku1014.   edoc | Open Access
Stölting, M. N. L., Ferrari, S., Handschin, C., Becskei, A., Provenzano, M., Sulser, T. and Eberli, D. (2013) “Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α”, Journal of Urology. Elsevier, 189(5), pp. 1952–1959. doi: 10.1016/j.juro.2012.10.071.   edoc | Open Access
Hsu, C., Scherrer, S., Buetti-Dinh, A., Ratna, P., Pizzolato, J., Jaquet, V. and Becskei, A. (2012) “Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution”, Nature communications. Nature Publishing Group, Vol. 3 , 682. doi: 10.1038/ncomms1687.   edoc
Ratna, P. and Becskei, A. (2011) “Construction of cis-regulatory input functions of yeast promoters”, Methods in Molecular Biology. Humana Press, 734, pp. 45–61.   edoc
Becskei, A., Scherrer, S., Kelemen, J. Z. and Murray, A. E. (2011) “Modeling of chromosomal epigenetic silencing processes”, Transcription. Taylor & Francis, 2(4), pp. 173–178.   edoc
Kelemen, J. Z., Ratna, P., Scherrer, S. and Becskei, A. (2010) “Spatial epigenetic control of mono- and bistable gene expression”, PLoS Biology. Public Library of Science, 8(3), p. e1000332. doi: 10.1371/journal.pbio.1000332.   edoc
Sun, L. and Becskei, A. (2010) “Systems biology: The cost of feedback control”, Nature. Macmillan, pp. 163–164. doi: 10.1038/467163a.   edoc
Ratna, P., Scherrer, S., Fleischli, C. and Becskei, A. (2009) “Synergy of repression and silencing gradients along the chromosome”, Journal of Molecular Biology. Elsevier, 387(4), pp. 826–839. doi: 10.1016/j.jmb.2009.02.025.   edoc
Becskei, A. (2009) “Linearization through distortion: a new facet of negative feedback in signalling”, Molecular Systems Biology. EMBO, 5, p. 255. doi: 10.1038/msb.2009.14.   edoc
Buetti-Dinh, A., Ungricht, R., Kelemen, J. Z., Shetty, C., Ratna, P. and Becskei, A. (2009) “Control and signal processing by transcriptional interference”, Molecular Systems Biology. EMBO, 5, p. 300. doi: 10.1038/msb.2009.61.   edoc
Byun, R. and Becskei, A. (2009) “Biology inspires engineering”, Genome Biology. BioMed Central, p. 317. doi: 10.1186/gb-2009-10-11-317.   edoc
Becskei, A. and Grusby, M. J. (2007) “Contribution of IL-12R mediated feedback loop to Th1 cell differentiation”, FEBS Letters. Elsevier, 581(27), pp. 5199–5206. doi: 10.1016/j.febslet.2007.10.007.   edoc
Becskei, A. and Mattaj, I. W. (2005) “Quantitative models of nuclear transport”, Current Opinion in Cell Biology. Elsevier, 17(1), pp. 27–34. doi: 10.1016/j.ceb.2004.12.010.   edoc
Acar, M., Becskei, A. and van Oudenaarden, A. (2005) “Enhancement of cellular memory by reducing stochastic transitions”, Nature. Macmillan, 435(7039), pp. 228–232. doi: 10.1038/nature03524.   edoc
Becskei, A., Kaufmann, B. B. and van Oudenaarden, A. (2005) “Contributions of low molecule number and chromosomal positioning to stochastic gene expression”, Nature Genetics. Nature Publishing Group, 37(9), pp. 937–944. doi: 10.1038/ng1616.   edoc
Ozbudak, E. M., Becskei, A. and van Oudenaarden, A. (2005) “A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization”, Developmental Cell. Elsevier, 9(4), pp. 565–571. doi: 10.1016/j.devcel.2005.08.014.   edoc
Becskei, A., Boselli, M. G. and van Oudenaarden, A. (2004) “Amplitude control of cell-cycle waves by nuclear import”, Nature Cell Biology . Nature Publishing Group, 6(5), pp. 451–457. doi: 10.1038/ncb1124.   edoc
Becskei, A. and Mattaj, I. W. (2003) “The strategy for coupling the RanGTP gradient to nuclear protein export”, Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 100(4), pp. 1717–1722. doi: 10.1073/pnas.252766999.   edoc
Louis, M. and Becskei, A. (2002) “Binary and graded responses in gene networks”, Science Signaling. American Association for the Advancement of Science, 2002(143), p. e33. doi: 10.1126/stke.2002.143.pe33.   edoc
Becskei, A., Séraphin, B. and Serrano, L. (2001) “Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion”, The EMBO Journal. Nature Publishing Group, 20(10), pp. 2528–2535.   edoc
Becskei, A. and Serrano, L. (2000) “Engineering stability in gene networks by autoregulation”, Nature. Macmillan, 405(6786), pp. 590–593. doi: 10.1038/35014651.   edoc
Jancsó, G., Domoki, F., Sántha, P., Varga, J., Fischer, J., Orosz, K., Penke, B., Becskei, A., Dux, M. and Tóth, L. (1998) “Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats”, Neuroscience Letters. Elsevier, 253(2), pp. 139–141. doi: 10.1016/S0304-3940(98)00622-3.   edoc